This is a toy example of a graph genome browser. We did the following:
- Generate a population of chromosomes (GRCh38 chr22) with randomly-generated structural variants inserted, using SVGen.
- Build a population graph of the generated chromosomes plus the reference genome, using TwoPaCo. Dump the graph to GFA format.
- Create a GFA to JSONGraph.
- Force-directed graph layout
- Sequence Tube Map
- Chord graphs